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Sample GSM1830342 Query DataSets for GSM1830342
Status Public on Jul 23, 2015
Title WB_non-statin_pt_149
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 60
Sex: F
smoking status: Former smoker
fev1% predicted: 67.9
fev1/fvc: 58.35
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.840958643
7892504 9.137407043
7892507 7.110163617
7892508 7.628893166
7892509 8.942203799
7892510 6.828415831
7892514 10.11274212
7892515 10.11828126
7892516 5.85509704
7892517 8.519131681
7892520 9.481564359
7892521 9.579537669
7892527 8.50871987
7892530 8.420598972
7892531 8.031161368
7892533 6.852924118
7892534 7.745587282
7892535 7.897216173
7892536 11.41498736
7892538 7.186864556

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830342_S687.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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