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Sample GSM1830338 Query DataSets for GSM1830338
Status Public on Jul 23, 2015
Title WB_non-statin_pt_146
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 74
Sex: F
smoking status: Former smoker
fev1% predicted: 43.1
fev1/fvc: 40.38
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.675450351
7892504 9.258723921
7892507 7.180836475
7892508 7.763890152
7892509 9.141416305
7892510 6.726749683
7892514 9.860861899
7892515 10.35357032
7892516 5.713579542
7892517 8.429285083
7892520 9.581161298
7892521 9.658841651
7892527 8.365441609
7892530 8.553541085
7892531 8.440620272
7892533 7.4114541
7892534 7.6778996
7892535 7.932818565
7892536 11.19203849
7892538 7.223776927

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830338_S878.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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