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Sample GSM1830337 Query DataSets for GSM1830337
Status Public on Jul 23, 2015
Title WB_non-statin_pt_145
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 66
Sex: M
smoking status: Former smoker
fev1% predicted: 19.9
fev1/fvc: 21
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.057305402
7892504 10.02999972
7892507 6.3790314
7892508 6.596181282
7892509 9.083599694
7892510 6.085313432
7892514 10.09838336
7892515 10.73030612
7892516 4.541035609
7892517 7.928689278
7892520 9.795743271
7892521 9.158167868
7892527 8.05100442
7892530 8.781741297
7892531 8.489095867
7892533 7.137898257
7892534 6.290014195
7892535 8.162391299
7892536 11.35852861
7892538 7.366426975

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830337_S535.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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