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Sample GSM1830336 Query DataSets for GSM1830336
Status Public on Jul 23, 2015
Title WB_statin_pt_36
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 60
Sex: M
smoking status: Former smoker
fev1% predicted: 39
fev1/fvc: 32.56
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.615702406
7892504 9.807406534
7892507 5.808907928
7892508 6.72384694
7892509 9.10086051
7892510 6.46358927
7892514 9.538165126
7892515 10.94705002
7892516 5.642692573
7892517 8.070453012
7892520 9.631342111
7892521 9.018409801
7892527 8.255830844
7892530 8.831924952
7892531 8.272091833
7892533 7.660201206
7892534 5.957698548
7892535 7.607557553
7892536 11.35283744
7892538 7.294585536

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830336_S529.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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