NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1830333 Query DataSets for GSM1830333
Status Public on Jul 23, 2015
Title WB_non-statin_pt_143
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 57
Sex: F
smoking status: Former smoker
fev1% predicted: 75.5
fev1/fvc: 68.48
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.537635606
7892504 9.047668934
7892507 6.983975993
7892508 7.494999743
7892509 9.385940355
7892510 6.773396047
7892514 9.642256138
7892515 9.886634264
7892516 5.763129647
7892517 8.310733949
7892520 9.081346103
7892521 9.538419866
7892527 8.376050804
7892530 8.753053647
7892531 8.038361713
7892533 6.172297165
7892534 7.311458745
7892535 7.132997874
7892536 11.18018708
7892538 7.067437128

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830333_S723.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap