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Sample GSM1830332 Query DataSets for GSM1830332
Status Public on Jul 23, 2015
Title WB_non-statin_pt_142
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 61
Sex: M
smoking status: Former smoker
fev1% predicted: 73.4
fev1/fvc: 50.9
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.509097562
7892504 8.932594365
7892507 6.943348723
7892508 7.68954202
7892509 9.14371542
7892510 6.743905355
7892514 9.754494052
7892515 10.06891857
7892516 5.594534838
7892517 8.202962273
7892520 9.691848003
7892521 9.59850424
7892527 8.365316353
7892530 8.59829346
7892531 8.150719839
7892533 6.362548274
7892534 7.170769038
7892535 8.232233818
7892536 10.84127319
7892538 7.248245406

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830332_S954.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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