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Sample GSM1830330 Query DataSets for GSM1830330
Status Public on Jul 23, 2015
Title WB_non-statin_pt_140
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 60
Sex: F
smoking status: Former smoker
fev1% predicted: 79.5
fev1/fvc: 75.63
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.581543885
7892504 9.105201242
7892507 7.030730553
7892508 7.722670164
7892509 9.250299034
7892510 6.482254785
7892514 9.819237815
7892515 10.12195727
7892516 5.787933539
7892517 7.872174238
7892520 9.194344312
7892521 9.590126529
7892527 8.43490771
7892530 8.813540424
7892531 8.097743271
7892533 7.126645975
7892534 7.694596904
7892535 7.537482028
7892536 11.02386753
7892538 7.131406531

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830330_S597.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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