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Sample GSM1830329 Query DataSets for GSM1830329
Status Public on Jul 23, 2015
Title WB_non-statin_pt_139
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 63
Sex: M
smoking status: Former smoker
fev1% predicted: 70.1
fev1/fvc: 56.07
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.332702333
7892504 9.129364918
7892507 7.333860329
7892508 7.601701981
7892509 9.173055783
7892510 6.834017303
7892514 10.12130682
7892515 10.06113352
7892516 5.702462821
7892517 8.365790695
7892520 9.36219396
7892521 9.666389059
7892527 7.736557563
7892530 8.846044249
7892531 8.322453732
7892533 7.500518106
7892534 7.767129658
7892535 8.010829737
7892536 10.8709647
7892538 7.146246301

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830329_S420.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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