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Sample GSM1830328 Query DataSets for GSM1830328
Status Public on Jul 23, 2015
Title WB_non-statin_pt_138
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 60
Sex: M
smoking status: Former smoker
fev1% predicted: 63.8
fev1/fvc: 46.62
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.516579841
7892504 9.437930607
7892507 6.777664562
7892508 7.48617045
7892509 9.459936654
7892510 6.767486771
7892514 10.02788549
7892515 10.28529265
7892516 5.91675241
7892517 8.210766922
7892520 9.274781728
7892521 9.355130543
7892527 7.970384674
7892530 8.88494046
7892531 8.368236296
7892533 7.341049651
7892534 7.27868806
7892535 7.402440721
7892536 11.3739483
7892538 7.100777167

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830328_S578.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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