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Sample GSM1830319 Query DataSets for GSM1830319
Status Public on Jul 23, 2015
Title WB_statin_pt_32
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 73
Sex: M
smoking status: Former smoker
fev1% predicted: 46.4
fev1/fvc: 34.1
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.435011063
7892504 9.380310727
7892507 6.426273653
7892508 7.500014046
7892509 8.600653349
7892510 6.550000821
7892514 9.73586125
7892515 9.934056196
7892516 5.493830331
7892517 8.267220337
7892520 8.565395808
7892521 9.279334569
7892527 8.11507814
7892530 8.665600297
7892531 8.238819791
7892533 7.34301996
7892534 7.098238176
7892535 7.114763451
7892536 11.11804566
7892538 6.980624826

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830319_S614.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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