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Sample GSM1830312 Query DataSets for GSM1830312
Status Public on Jul 23, 2015
Title WB_non-statin_pt_128
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: Control
age: 58
Sex: M
smoking status: Former smoker
fev1% predicted: 90.1
fev1/fvc: 67.33
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 5.051501175
7892504 8.958310005
7892507 7.092705619
7892508 8.034288726
7892509 9.277042525
7892510 6.624263842
7892514 9.983244292
7892515 10.23475108
7892516 5.762644683
7892517 8.497605929
7892520 9.467740493
7892521 9.43053667
7892527 8.592531577
7892530 8.77351613
7892531 9.071998536
7892533 6.872258263
7892534 7.475885481
7892535 6.846738901
7892536 11.69329665
7892538 6.82477865

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830312_S945.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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