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Sample GSM1830309 Query DataSets for GSM1830309
Status Public on Jul 23, 2015
Title WB_statin_pt_28
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: Control
age: 57
Sex: M
smoking status: Former smoker
fev1% predicted: 97.9
fev1/fvc: 77.34
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.543221539
7892504 9.256000049
7892507 6.901337596
7892508 7.720723533
7892509 8.662624524
7892510 6.942431257
7892514 10.04082349
7892515 10.19350743
7892516 6.305017936
7892517 8.176281087
7892520 9.352869974
7892521 9.390416152
7892527 8.516002788
7892530 8.672277076
7892531 8.344661679
7892533 6.911550351
7892534 7.577893768
7892535 7.619773058
7892536 11.53236754
7892538 7.412436757

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830309_S700.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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