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Sample GSM1830300 Query DataSets for GSM1830300
Status Public on Jul 23, 2015
Title WB_non-statin_pt_117
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 64
Sex: M
smoking status: Former smoker
fev1% predicted: 38.1
fev1/fvc: 29.15
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.807283019
7892504 9.056158558
7892507 7.198958707
7892508 7.825869578
7892509 9.127077182
7892510 6.416143494
7892514 10.24310741
7892515 10.17695798
7892516 5.890070808
7892517 8.540423248
7892520 9.556333671
7892521 9.685507636
7892527 8.818783825
7892530 8.827308624
7892531 8.428826714
7892533 6.936445348
7892534 8.075027652
7892535 7.44061506
7892536 11.30925718
7892538 7.286849218

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830300_S761.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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