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Sample GSM1830297 Query DataSets for GSM1830297
Status Public on Jul 23, 2015
Title WB_statin_pt_27
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 63
Sex: M
smoking status: Former smoker
fev1% predicted: 30.4
fev1/fvc: 19.79
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.59540792
7892504 9.124382334
7892507 6.736289244
7892508 7.263430526
7892509 9.278565786
7892510 6.447704552
7892514 9.429445873
7892515 10.40180018
7892516 5.319525239
7892517 8.357890528
7892520 8.938253354
7892521 9.18352133
7892527 7.782154221
7892530 8.333362504
7892531 8.191034911
7892533 7.075087444
7892534 6.999098235
7892535 7.797021545
7892536 11.08440805
7892538 6.692549492

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830297_S291.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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