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Sample GSM1830293 Query DataSets for GSM1830293
Status Public on Jul 23, 2015
Title WB_non-statin_pt_111
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: Control
age: 60
Sex: M
smoking status: Former smoker
fev1% predicted: 86.4
fev1/fvc: 74.34
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.792144741
7892504 9.517827342
7892507 7.126791956
7892508 7.547751824
7892509 9.132609447
7892510 6.669128331
7892514 10.18541133
7892515 9.830540592
7892516 5.622150675
7892517 8.215561722
7892520 9.541112953
7892521 9.725446385
7892527 8.469806632
7892530 8.775046636
7892531 8.297908529
7892533 7.237558206
7892534 7.158477961
7892535 7.56162747
7892536 11.88955108
7892538 7.116313437

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830293_S890.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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