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Sample GSM1830291 Query DataSets for GSM1830291
Status Public on Jul 23, 2015
Title WB_statin_pt_26
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 62
Sex: M
smoking status: Former smoker
fev1% predicted: 47.2
fev1/fvc: 35.32
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.722365592
7892504 9.425462207
7892507 7.050120648
7892508 7.687696514
7892509 8.556112323
7892510 6.580087144
7892514 9.795757002
7892515 10.10811725
7892516 5.628285858
7892517 8.320641239
7892520 9.263943768
7892521 9.600052236
7892527 8.456117492
7892530 7.776535123
7892531 8.17457871
7892533 7.181616069
7892534 7.842300236
7892535 7.317374314
7892536 11.63487815
7892538 7.19043991

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830291_S393.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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