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Sample GSM1830287 Query DataSets for GSM1830287
Status Public on Jul 23, 2015
Title WB_non-statin_pt_107
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 66
Sex: M
smoking status: Former smoker
fev1% predicted: 52.5
fev1/fvc: 41.53
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.755636879
7892504 9.298735674
7892507 6.665863649
7892508 7.690181396
7892509 8.403828078
7892510 6.503310552
7892514 10.28452682
7892515 9.747554994
7892516 5.801975484
7892517 8.419745568
7892520 8.975699303
7892521 9.721910024
7892527 8.5053365
7892530 8.738370422
7892531 8.676390234
7892533 6.801363209
7892534 7.278075024
7892535 6.178358981
7892536 11.84329991
7892538 6.277799227

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830287_S657.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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