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Sample GSM1830284 Query DataSets for GSM1830284
Status Public on Jul 23, 2015
Title WB_non-statin_pt_104
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 59
Sex: M
smoking status: Former smoker
fev1% predicted: 30.8
fev1/fvc: 22.13
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.847063693
7892504 9.031816865
7892507 6.939190368
7892508 7.616967059
7892509 8.907688124
7892510 6.527719029
7892514 10.01104202
7892515 9.962343683
7892516 5.632577615
7892517 8.75014077
7892520 9.597422906
7892521 9.49974073
7892527 8.09168164
7892530 8.737339189
7892531 8.50992991
7892533 6.901780959
7892534 7.1385877
7892535 7.822370641
7892536 10.90017089
7892538 7.313487413

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830284_S575.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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