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Sample GSM1830282 Query DataSets for GSM1830282
Status Public on Jul 23, 2015
Title WB_non-statin_pt_102
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 61
Sex: M
smoking status: Former smoker
fev1% predicted: 49.3
fev1/fvc: 32.18
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.512506661
7892504 8.981664505
7892507 7.078127323
7892508 7.854611989
7892509 9.431601667
7892510 6.938144614
7892514 10.08070599
7892515 10.06421231
7892516 5.828965628
7892517 8.275395767
7892520 9.317329997
7892521 9.416399664
7892527 8.6461472
7892530 8.896492706
7892531 8.262386809
7892533 7.174627232
7892534 7.974471567
7892535 7.739089765
7892536 11.20090486
7892538 7.127892893

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830282_S301.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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