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Sample GSM1830274 Query DataSets for GSM1830274
Status Public on Jul 23, 2015
Title WB_non-statin_pt_95
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: Control
age: 61
Sex: M
smoking status: Never smoked
fev1% predicted: 98.7
fev1/fvc: 82.92
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.688991096
7892504 9.086907737
7892507 7.350674295
7892508 7.880701432
7892509 8.571111559
7892510 6.650829639
7892514 10.04453742
7892515 9.933404314
7892516 5.699116701
7892517 8.481571902
7892520 9.513367694
7892521 9.685337753
7892527 8.503250337
7892530 8.43489895
7892531 8.305060846
7892533 7.115598865
7892534 7.72389453
7892535 7.232876374
7892536 11.34442999
7892538 7.067804267

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830274_S327.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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