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Sample GSM1830273 Query DataSets for GSM1830273
Status Public on Jul 23, 2015
Title WB_non-statin_pt_94
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 63
Sex: M
smoking status: Former smoker
fev1% predicted: 73.5
fev1/fvc: 48.5
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.57240729
7892504 9.916086687
7892507 6.78222224
7892508 6.852312599
7892509 9.284723908
7892510 6.257342671
7892514 9.975887658
7892515 10.39347778
7892516 5.60717132
7892517 7.884380737
7892520 8.940743672
7892521 9.172415527
7892527 7.811959553
7892530 8.652020108
7892531 7.891657212
7892533 7.134468269
7892534 7.454611018
7892535 7.119984053
7892536 11.52650124
7892538 7.011850472

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830273_S487.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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