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Sample GSM1830272 Query DataSets for GSM1830272
Status Public on Jul 23, 2015
Title WB_non-statin_pt_93
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 51
Sex: M
smoking status: Former smoker
fev1% predicted: 74.7
fev1/fvc: 60.65
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.830430857
7892504 8.973107162
7892507 7.01981795
7892508 7.322501652
7892509 9.40638229
7892510 6.255051672
7892514 10.04210745
7892515 9.877584055
7892516 5.718057951
7892517 8.491813305
7892520 9.347664491
7892521 9.238482656
7892527 8.450265714
7892530 8.524821616
7892531 8.178391253
7892533 6.960185968
7892534 7.126437886
7892535 6.774456956
7892536 11.5830431
7892538 7.24936448

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830272_S265.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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