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Sample GSM1830270 Query DataSets for GSM1830270
Status Public on Jul 23, 2015
Title WB_statin_pt_23
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 61
Sex: F
smoking status: Former smoker
fev1% predicted: 79.3
fev1/fvc: 71.28
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.918511139
7892504 9.261936271
7892507 7.254897719
7892508 7.762783594
7892509 9.535900964
7892510 6.908032089
7892514 10.46688076
7892515 10.22165375
7892516 5.77775656
7892517 8.475720734
7892520 9.694128887
7892521 9.60589297
7892527 9.000278123
7892530 8.788431364
7892531 8.763356843
7892533 7.307365406
7892534 7.889237178
7892535 8.148450648
7892536 11.72565346
7892538 7.271449482

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830270_S427.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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