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Sample GSM1830268 Query DataSets for GSM1830268
Status Public on Jul 23, 2015
Title WB_non-statin_pt_90
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 73
Sex: M
smoking status: Former smoker
fev1% predicted: 80.1
fev1/fvc: 54.14
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.765210066
7892504 9.076865025
7892507 6.889687467
7892508 7.764398519
7892509 9.176113338
7892510 6.872611554
7892514 9.950524216
7892515 10.45791039
7892516 5.800201836
7892517 8.143156514
7892520 9.409098894
7892521 9.489534489
7892527 8.049049283
7892530 8.846451898
7892531 8.362637238
7892533 7.057532278
7892534 7.915958567
7892535 7.018854078
7892536 11.41797362
7892538 7.311369978

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830268_S737.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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