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Sample GSM1830264 Query DataSets for GSM1830264
Status Public on Jul 23, 2015
Title WB_non-statin_pt_86
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 59
Sex: F
smoking status: Former smoker
fev1% predicted: 43.2
fev1/fvc: 47.27
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.533952168
7892504 8.974485505
7892507 7.190050938
7892508 7.179872751
7892509 9.23550819
7892510 6.327317056
7892514 9.823168602
7892515 10.07143232
7892516 5.659521055
7892517 7.96180319
7892520 9.041643719
7892521 9.201040573
7892527 8.14829187
7892530 8.765289055
7892531 8.102505591
7892533 6.837962592
7892534 7.185458316
7892535 7.068545257
7892536 10.8246038
7892538 7.000013289

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830264_S294.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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