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Sample GSM1830263 Query DataSets for GSM1830263
Status Public on Jul 23, 2015
Title WB_non-statin_pt_85
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 61
Sex: M
smoking status: Former smoker
fev1% predicted: 30
fev1/fvc: 42.92
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.484664474
7892504 9.444021398
7892507 6.792718824
7892508 7.42777579
7892509 8.888754037
7892510 6.266776218
7892514 9.814990281
7892515 10.91664813
7892516 5.664582183
7892517 8.079570066
7892520 9.028640719
7892521 9.351390985
7892527 8.44016806
7892530 8.321032156
7892531 8.17420409
7892533 7.021610042
7892534 7.919105803
7892535 7.312470813
7892536 11.28755946
7892538 7.206580246

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830263_S204.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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