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Sample GSM1830262 Query DataSets for GSM1830262
Status Public on Jul 23, 2015
Title WB_non-statin_pt_84
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: Control
age: 59
Sex: M
smoking status: Never smoked
fev1% predicted: 120.3
fev1/fvc: 74.27
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.596919446
7892504 8.900099664
7892507 7.070983785
7892508 7.825570772
7892509 9.143194027
7892510 7.213787179
7892514 10.00479332
7892515 10.03116346
7892516 5.81352642
7892517 8.432814609
7892520 9.67342606
7892521 9.662611451
7892527 8.283543235
7892530 8.687948466
7892531 8.127090308
7892533 6.926023614
7892534 7.270940238
7892535 7.9647596
7892536 11.19741956
7892538 7.432696419

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830262_S491.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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