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Sample GSM1830261 Query DataSets for GSM1830261
Status Public on Jul 23, 2015
Title WB_non-statin_pt_83
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 54
Sex: F
smoking status: Former smoker
fev1% predicted: 86
fev1/fvc: 66.89
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.792894961
7892504 9.04583148
7892507 7.569255436
7892508 7.825025733
7892509 9.281970416
7892510 6.997214793
7892514 10.05033211
7892515 10.19148294
7892516 5.89226987
7892517 8.662669893
7892520 9.916214301
7892521 9.676502165
7892527 8.543361016
7892530 8.751490197
7892531 8.009069487
7892533 7.102158258
7892534 7.92195213
7892535 7.48194076
7892536 11.4230167
7892538 7.350236884

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830261_S598.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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