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Sample GSM1830259 Query DataSets for GSM1830259
Status Public on Jul 23, 2015
Title WB_non-statin_pt_81
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: Control
age: 54
Sex: F
smoking status: Former smoker
fev1% predicted: 85.4
fev1/fvc: 68.17
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.494817499
7892504 9.016102616
7892507 7.024566597
7892508 7.671068136
7892509 9.024964948
7892510 7.044491234
7892514 10.29557297
7892515 9.552324075
7892516 5.658353234
7892517 8.268248458
7892520 9.563974732
7892521 9.603827809
7892527 8.736587688
7892530 8.570344196
7892531 8.304442461
7892533 6.987378657
7892534 7.082648234
7892535 7.745446899
7892536 11.38240162
7892538 6.822295737

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830259_S556.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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