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Sample GSM1830258 Query DataSets for GSM1830258
Status Public on Jul 23, 2015
Title WB_statin_pt_22
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: Control
age: 67
Sex: M
smoking status: Former smoker
fev1% predicted: 131.4
fev1/fvc: 86.47
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.896824013
7892504 9.270343259
7892507 6.889347077
7892508 7.696931257
7892509 9.361104918
7892510 6.318759257
7892514 10.00541246
7892515 10.47821403
7892516 5.814111863
7892517 8.437252915
7892520 9.509886497
7892521 9.431929002
7892527 8.235054787
7892530 8.831372942
7892531 8.403558129
7892533 7.242121503
7892534 7.472828862
7892535 7.838885335
7892536 11.63899488
7892538 7.243311026

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830258_S663.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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