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Sample GSM1830257 Query DataSets for GSM1830257
Status Public on Jul 23, 2015
Title WB_non-statin_pt_80
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 55
Sex: M
smoking status: Former smoker
fev1% predicted: 73.8
fev1/fvc: 50.23
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.629493518
7892504 8.568745136
7892507 7.221867627
7892508 7.911259854
7892509 9.30442133
7892510 7.27646646
7892514 9.59287134
7892515 10.2171909
7892516 6.09329398
7892517 8.25780372
7892520 9.626119383
7892521 9.623307067
7892527 8.399311037
7892530 8.544611551
7892531 8.294008802
7892533 6.427359571
7892534 7.181186391
7892535 7.166983296
7892536 11.24119473
7892538 7.267741383

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830257_S378.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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