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Sample GSM1830254 Query DataSets for GSM1830254
Status Public on Jul 23, 2015
Title WB_non-statin_pt_77
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: Control
age: 61
Sex: F
smoking status: Never smoked
fev1% predicted: 122.3
fev1/fvc: 74.58
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.584559838
7892504 9.339723623
7892507 6.768903391
7892508 7.281258539
7892509 9.075026295
7892510 6.624046747
7892514 9.496530211
7892515 10.58737667
7892516 5.523856114
7892517 8.318877537
7892520 9.247513783
7892521 9.217681014
7892527 8.221221924
7892530 8.790156949
7892531 8.253290859
7892533 7.079672621
7892534 6.93459019
7892535 7.288652558
7892536 11.00629257
7892538 7.196412036

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830254_S146.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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