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Sample GSM1830253 Query DataSets for GSM1830253
Status Public on Jul 23, 2015
Title WB_non-statin_pt_76
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: Control
age: 51
Sex: M
smoking status: Former smoker
fev1% predicted: 121.8
fev1/fvc: 71.51
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.744161754
7892504 9.310366272
7892507 6.544833205
7892508 7.750373247
7892509 9.107773112
7892510 6.293782154
7892514 10.0615563
7892515 10.32495614
7892516 5.795124241
7892517 8.345441606
7892520 9.11297125
7892521 9.40476649
7892527 8.400818383
7892530 8.867762875
7892531 8.066370727
7892533 7.290686873
7892534 7.793025856
7892535 6.956467891
7892536 11.94298502
7892538 7.133429263

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830253_S760.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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