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Sample GSM1830252 Query DataSets for GSM1830252
Status Public on Jul 23, 2015
Title WB_non-statin_pt_75
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 60
Sex: F
smoking status: Former smoker
fev1% predicted: 61.2
fev1/fvc: 57.56
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.668215431
7892504 9.314788094
7892507 7.056227391
7892508 7.623007167
7892509 9.09664672
7892510 5.793563296
7892514 10.06010377
7892515 10.55119946
7892516 5.848828778
7892517 8.23026264
7892520 9.670450388
7892521 9.599454968
7892527 8.143125597
7892530 8.580665002
7892531 8.539817247
7892533 7.491179029
7892534 6.605911296
7892535 7.406457514
7892536 11.24375276
7892538 7.296619491

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830252_S298.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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