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Sample GSM1830251 Query DataSets for GSM1830251
Status Public on Jul 23, 2015
Title WB_non-statin_pt_74
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 72
Sex: M
smoking status: Former smoker
fev1% predicted: 63.1
fev1/fvc: 43.38
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.7344129
7892504 9.731319313
7892507 7.004025495
7892508 7.454515734
7892509 8.900073492
7892510 5.824209166
7892514 10.26277224
7892515 10.54530895
7892516 5.877729491
7892517 8.108071814
7892520 9.662113577
7892521 9.461778271
7892527 8.316216103
7892530 8.789412886
7892531 8.345772219
7892533 6.965535103
7892534 7.233846927
7892535 7.781282528
7892536 11.37696943
7892538 7.362490348

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830251_S639.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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