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Sample GSM1830249 Query DataSets for GSM1830249
Status Public on Jul 23, 2015
Title WB_non-statin_pt_72
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 73
Sex: M
smoking status: Former smoker
fev1% predicted: 47.1
fev1/fvc: 35.44
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.657859743
7892504 9.508983828
7892507 6.74323718
7892508 7.41122449
7892509 8.303090834
7892510 6.25933008
7892514 9.943415354
7892515 10.30731505
7892516 5.532826153
7892517 8.286618053
7892520 9.151111889
7892521 9.291736737
7892527 7.928073057
7892530 8.778631832
7892531 8.110969831
7892533 7.256551801
7892534 7.248977315
7892535 7.650421893
7892536 11.13438664
7892538 6.983505383

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830249_S178.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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