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Sample GSM1830244 Query DataSets for GSM1830244
Status Public on Jul 23, 2015
Title WB_non-statin_pt_67
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 61
Sex: M
smoking status: Former smoker
fev1% predicted: 57.5
fev1/fvc: 66.36
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.744718479
7892504 9.309441083
7892507 6.901792119
7892508 7.987866972
7892509 8.588794354
7892510 6.860503647
7892514 10.2694259
7892515 10.19487187
7892516 5.698826512
7892517 8.414741379
7892520 9.541585966
7892521 9.398702432
7892527 8.899533274
7892530 9.085877448
7892531 9.330797718
7892533 6.409761793
7892534 8.092479589
7892535 7.612355172
7892536 11.99752396
7892538 7.115648107

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830244_S778.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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