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Sample GSM1830243 Query DataSets for GSM1830243
Status Public on Jul 23, 2015
Title WB_statin_pt_21
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 69
Sex: M
smoking status: Former smoker
fev1% predicted: 56.3
fev1/fvc: 52.43
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.621662539
7892504 9.527134862
7892507 6.233694056
7892508 7.372489856
7892509 8.734944343
7892510 6.684356728
7892514 10.03526377
7892515 10.28881906
7892516 5.686377291
7892517 8.004110622
7892520 9.778038411
7892521 9.429695225
7892527 8.186583195
7892530 8.848598306
7892531 8.364414364
7892533 6.703005324
7892534 7.763535279
7892535 7.390423404
7892536 11.36131731
7892538 7.533409664

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830243_S559.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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