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Sample GSM1830242 Query DataSets for GSM1830242
Status Public on Jul 23, 2015
Title WB_non-statin_pt_66
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 70
Sex: M
smoking status: Former smoker
fev1% predicted: 44.1
fev1/fvc: 46.23
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.807908147
7892504 9.379230082
7892507 7.008017571
7892508 7.768019726
7892509 9.209115147
7892510 6.828047483
7892514 9.932079609
7892515 10.46130526
7892516 5.779703008
7892517 8.40662479
7892520 9.499436754
7892521 9.277263129
7892527 8.211241445
7892530 8.882270339
7892531 8.41099861
7892533 7.363546316
7892534 7.559319261
7892535 7.559385826
7892536 11.32817261
7892538 7.265431967

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830242_S891.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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