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Sample GSM1830241 Query DataSets for GSM1830241
Status Public on Jul 23, 2015
Title WB_non-statin_pt_65
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 59
Sex: M
smoking status: Former smoker
fev1% predicted: 43.8
fev1/fvc: 50.58
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.9458597
7892504 9.428636579
7892507 6.559638375
7892508 7.318953431
7892509 8.684886839
7892510 6.506830619
7892514 10.18345578
7892515 9.67218847
7892516 5.824127988
7892517 7.771542974
7892520 8.689747111
7892521 9.430782232
7892527 8.345017771
7892530 8.883931336
7892531 8.188359626
7892533 7.01382416
7892534 7.825777528
7892535 6.645478811
7892536 11.91079932
7892538 6.739029844

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830241_S318.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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