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Sample GSM1830232 Query DataSets for GSM1830232
Status Public on Jul 23, 2015
Title WB_non-statin_pt_56
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: Control
age: 61
Sex: M
smoking status: Never smoked
fev1% predicted: 94
fev1/fvc: 78.89
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.417921194
7892504 10.27553534
7892507 6.787120714
7892508 7.281664963
7892509 7.736558598
7892510 4.968970942
7892514 9.954112195
7892515 10.92179249
7892516 5.116597872
7892517 8.304119801
7892520 9.639931456
7892521 9.477801638
7892527 7.975880872
7892530 8.41143986
7892531 8.438214969
7892533 7.815147821
7892534 7.096103882
7892535 7.393691523
7892536 11.38143974
7892538 7.261758937

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830232_S279.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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