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Sample GSM1830229 Query DataSets for GSM1830229
Status Public on Jul 23, 2015
Title WB_non-statin_pt_53
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 50
Sex: F
smoking status: Former smoker
fev1% predicted: 71.8
fev1/fvc: 65.19
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.389136566
7892504 9.656437279
7892507 6.684366924
7892508 6.870825587
7892509 9.030305665
7892510 6.298296229
7892514 9.788372826
7892515 10.0244031
7892516 4.691865291
7892517 7.910028824
7892520 9.210313519
7892521 9.378748959
7892527 7.935622341
7892530 8.641944322
7892531 8.376889068
7892533 6.935965537
7892534 7.621086508
7892535 5.925594658
7892536 11.35120122
7892538 6.943415719

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830229_S864.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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