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Sample GSM1830227 Query DataSets for GSM1830227
Status Public on Jul 23, 2015
Title WB_non-statin_pt_51
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 68
Sex: M
smoking status: Former smoker
fev1% predicted: 47.8
fev1/fvc: 42.89
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.602186593
7892504 9.507916187
7892507 7.096734289
7892508 7.315700809
7892509 9.019799065
7892510 5.606305465
7892514 9.770021452
7892515 9.848742893
7892516 5.559896595
7892517 7.932096387
7892520 9.3989677
7892521 9.423732455
7892527 7.343424688
7892530 8.624708239
7892531 8.467156609
7892533 7.11521478
7892534 7.103908849
7892535 8.03588106
7892536 11.29151906
7892538 7.424576266

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830227_S408.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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