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Sample GSM1830222 Query DataSets for GSM1830222
Status Public on Jul 23, 2015
Title WB_non-statin_pt_46
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: Control
age: 60
Sex: F
smoking status: Former smoker
fev1% predicted: 129.2
fev1/fvc: 83.65
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.731486836
7892504 9.201574169
7892507 7.182655475
7892508 7.805905943
7892509 9.336537031
7892510 6.897633432
7892514 9.276640176
7892515 10.55166082
7892516 5.720525464
7892517 8.594617241
7892520 9.696582745
7892521 9.407838816
7892527 8.327615566
7892530 8.839456829
7892531 8.271888265
7892533 7.170293428
7892534 7.54723912
7892535 7.821756365
7892536 11.50899504
7892538 7.294012653

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830222_S156.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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