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Sample GSM1830221 Query DataSets for GSM1830221
Status Public on Jul 23, 2015
Title WB_non-statin_pt_45
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: Control
age: 59
Sex: M
smoking status: Former smoker
fev1% predicted: 132.1
fev1/fvc: 85.13
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.520881271
7892504 9.009008468
7892507 6.95453561
7892508 7.56196297
7892509 9.272627793
7892510 6.826314648
7892514 9.823897639
7892515 10.13451742
7892516 5.827476699
7892517 8.321857645
7892520 9.296819887
7892521 9.045823563
7892527 8.409732926
7892530 8.677722067
7892531 8.162175937
7892533 7.13516957
7892534 7.226883535
7892535 7.623096142
7892536 10.97634228
7892538 7.232545618

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830221_S344.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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