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Sample GSM1830213 Query DataSets for GSM1830213
Status Public on Jul 23, 2015
Title WB_non-statin_pt_38
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 71
Sex: F
smoking status: Former smoker
fev1% predicted: 68.8
fev1/fvc: 43.55
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.448217708
7892504 9.307789357
7892507 7.016455695
7892508 7.395354383
7892509 9.264753425
7892510 6.846557817
7892514 10.21411415
7892515 9.707236264
7892516 5.608394726
7892517 7.758196482
7892520 9.686806558
7892521 9.369116377
7892527 8.267031894
7892530 8.698904912
7892531 8.056428527
7892533 6.116475555
7892534 7.915502571
7892535 6.812296751
7892536 11.32234015
7892538 7.234437268

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830213_S815.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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