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Sample GSM1830201 Query DataSets for GSM1830201
Status Public on Jul 23, 2015
Title WB_non-statin_pt_28
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 66
Sex: F
smoking status: Former smoker
fev1% predicted: 30.4
fev1/fvc: 33.45
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.690954254
7892504 9.027754318
7892507 7.15492662
7892508 7.397243394
7892509 9.263351964
7892510 6.89288375
7892514 9.839578382
7892515 10.14522573
7892516 5.741978044
7892517 8.259474706
7892520 9.33946871
7892521 9.36838047
7892527 8.379375797
7892530 8.848954139
7892531 8.417243876
7892533 7.15137105
7892534 7.329395339
7892535 7.400529513
7892536 11.33602169
7892538 7.239815883

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830201_S349.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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