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Sample GSM1830194 Query DataSets for GSM1830194
Status Public on Jul 23, 2015
Title WB_statin_pt_14
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: Control
age: 69
Sex: M
smoking status: Former smoker
fev1% predicted: 100.3
fev1/fvc: 73.46
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.548076177
7892504 9.312983328
7892507 6.502556946
7892508 7.199567484
7892509 9.209037895
7892510 6.621294774
7892514 10.0719713
7892515 10.08791042
7892516 5.677201708
7892517 7.852237271
7892520 9.158879876
7892521 9.275526213
7892527 8.27928407
7892530 8.793222076
7892531 8.149964382
7892533 7.201538748
7892534 7.661472792
7892535 7.954392606
7892536 10.9540282
7892538 7.189916628

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830194_S616.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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