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Sample GSM1830192 Query DataSets for GSM1830192
Status Public on Jul 23, 2015
Title WB_statin_pt_13
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: Control
age: 55
Sex: M
smoking status: Never smoked
fev1% predicted: 102.3
fev1/fvc: 82.92
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.482691872
7892504 9.284306564
7892507 7.142422585
7892508 7.164456382
7892509 8.66697113
7892510 7.012487796
7892514 10.02896639
7892515 10.26745903
7892516 5.678213253
7892517 7.84525979
7892520 9.379606382
7892521 9.172959932
7892527 8.023379687
7892530 8.591118259
7892531 8.166038653
7892533 7.127025045
7892534 7.738238254
7892535 7.689568233
7892536 11.39848778
7892538 7.431367301

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830192_S931.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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