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Sample GSM1830191 Query DataSets for GSM1830191
Status Public on Jul 23, 2015
Title WB_non-statin_pt_23
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 63
Sex: M
smoking status: Former smoker
fev1% predicted: 56.5
fev1/fvc: 46.58
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.597171106
7892504 9.057505502
7892507 7.053542519
7892508 8.004622037
7892509 9.311741297
7892510 6.466071618
7892514 9.805847678
7892515 10.03682512
7892516 5.672122536
7892517 8.594115779
7892520 9.617700976
7892521 9.362700683
7892527 8.655787016
7892530 8.992080422
7892531 8.542697977
7892533 6.929296756
7892534 7.817435791
7892535 7.790909843
7892536 11.49808577
7892538 7.271501452

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830191_S748.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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